Basic Information
VIS ID
TVIS42000091
Fusion event
EBV-NOXRED1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
48293
Orient
+
Integrated sequence
CCTGGACTCACAAAGCTGTGTGACGGTCCCGAGCTTCTCCCGCTGGGCCCAGTCTCACGCCAGCGAGCTCGATCCCCGGGAGATTCGCGACAGAGTTACA| |CCAGCGACTGCACCTTCGTTCGTGGCTGATCATGCCTCGGCTCTATTGGCCTCCCTCCAGAAGAAGGCCTCCGACACCCCCTGTGGGAATCCCATTCAGT
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
77864754/77398411 (Hg38)
End
77864754/77398411 (Hg38)
Orient
+
Location type
Intronic
Target gene
NOXRED1
Nearest miRNA
hsa-mir-1260a/Upstream/132121; hsa-mir-1185-1/Downstream/16549815;
Nearest TSS
ENST00000550708/Upstream/21278; ENST00000555517/Downstream/24645;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/21008, chr14-CpG: 51/Downstream/59116
Upstream sequence
TGCTGCCATCATCTCCCTATGTGGGCCCACTTCTCTCCCCGGGCCATCCCTGTAGGCTCTTCTTTGCCCTTGGTGACCTCAGTAGGAGCTCTCCGTTTCC
Downstream sequence
accttctggggttttatctgagcctaactgacctgggggaagagaaatagccagttccagtcaggtctacccttccacgtggaaggaggaatgggctcct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate