Basic Information
VIS ID
TVIS42000094
Fusion event
EBV-LINC02296 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
154672
Orient
+
Integrated sequence
CAGGGGCTGGATGACGGTGGCCCCCTGGTAGCCGTCCCGGTCAGAGGCCGAGGGCATGGGCAGGATAAAGTTTTCCTTTTGGGCGGCCGCCAGGAGGCAG| |GAGAACACGCGGATCTGCTGCCCATCGTCCAGCACCCGCCTGCAGGGGATGTGAGCGATCTTGGCAATCTCTGCCACCTCCACGTGGATCACGAAATGGT
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
88013831/87547487 (Hg38)
End
88013831/87547487 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02296
Nearest miRNA
hsa-mir-1260a/Upstream/10281197; hsa-mir-1185-1/Downstream/6400739;
Nearest TSS
ENST00000550708/Upstream/223734; ENST00000554205/Downstream/20694;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2013353, chr14-CpG: 87/Downstream/445065
Upstream sequence
CTATAGAAAATAACTGAAGGCTTATAACCCTAAAATAAGAAATGGTTGAGCATGTTCTCAGAGCAACACTAGCATTTAGATAAGATAAAGAAACCAAGTC
Downstream sequence
TCCATAATATGGCATCACTGATTTGAGCTTGTCAGTTTGAGGGCAAACCGTTTTTTCCCTTTGCTGTTTTGCTTTTTTGGCAGATCACATCTATTTCTAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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