Basic Information
VIS ID
TVIS42000095
Fusion event
EBV-LINC02296 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
70927
Orient
-
Integrated sequence
AGGAAGCAGGGTGCCAGCTCTTTGAGCTTGGTCAGGATCACCTTGCTAAGACTCATGGCGCAGGCCAGGAGGATGTCTTCCGCGGGAGCTAGGGGCAGGT| |CGCCGTGGTAGGTGATCTCCTGGAGCCAAAAGATGGTCTCTTCTAGCATGGCCACCAGGGTGCAGAGCCCCGCGTTCTGGATCGCCTGCATGCGTGCATC
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
88032764/87566420 (Hg38)
End
88032764/87566420 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02296
Nearest miRNA
hsa-mir-1260a/Upstream/10300130; hsa-mir-1185-1/Downstream/6381806;
Nearest TSS
ENST00000550708/Upstream/242667; ENST00000554205/Downstream/1761;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2032286, chr14-CpG: 87/Downstream/426132
Upstream sequence
TACTTTATTTAAATGTTAAGAAAGGTGACCTTTGTAAGGGAAGTTGGCAGTATTAACAATTTAAAGCATCTTTCTGACAATACATTTAAGGGCTAGTTAT
Downstream sequence
ccacagagtcatgagccagcttcctgtacagcccacagggtcatgagccagttaaacctcttttctttataaattacccagcctcaggtatttctttata
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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