Basic Information
VIS ID
TVIS42000096
Fusion event
EBV-TDP1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
81366
Orient
-
Integrated sequence
GCCCGTGGGAGCACTTATGGCACACCTAGGCCGCCTGTTCCGAAACCAAGACCAGAGGTCCCACAAAGCGACGAGACAGCTACCAGTCACGGGTCGGCGC| |AAGTCCCAGAACCCCCAACCATTCACCTAGCAGCTCAGGGAATGGCATACCCATTACATGAACAACACGGCATGGCCCCGTGTCCGGTAGCACAGGCCCC
Host Sequence
Chromosome
chr14
Cytoband
q32.11
Reference genome
GRCh37/hg19
Start
90459973/89993629 (Hg38)
End
90459973/89993629 (Hg38)
Orient
+
Location type
Intronic
Target gene
TDP1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-193b-3p ; hsa-mir-320a
Nearest miRNA
hsa-mir-1260a/Upstream/12727339; hsa-mir-1185-1/Downstream/3954597;
Nearest TSS
ENST00000550708/Upstream/8470; ENST00000282146/Downstream/68136;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/37380, chr14-CpG: 240/Downstream/66723
Upstream sequence
ctcatcacatgatatgcctgctccttttttgccttctgctatgattgggagcttcctgacgcctcctcagaaatagatgctgctctgcttcctgtacagc
Downstream sequence
GCATCCCATGACTAATCCCTTTGTAAAGTATATGATCATCACCTACTTTTGCTTATAAGTCTAGATGTTTATCAGATTTGCATAAAGTTAACATTTACTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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