Basic Information
VIS ID
TVIS42000098
Fusion event
EBV-TDRD9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
125424
Orient
+
Integrated sequence
GCAGGGAGGCCACCTTTTACGCGTGTCGGGCTATGCGTCGGCTTCTACTCGGCGTTATCCGAATGAATGACTGCCAGGAGCTGCCACCCGGTTTAATAAT| |TCTGAGTCCGGGCACCGTCCCTGGCCCCCTTGGAGTCCAGAGTCTGGAGCATACAGACTGCGAAATATGGTCCTCTGCCCACCCTGACCACGCTGCCCAC
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
GRCh37/hg19
Start
104455263/103988926 (Hg38)
End
104455263/103988926 (Hg38)
Orient
+
Location type
Intronic
Target gene
TDRD9
Nearest miRNA
hsa-mir-1185-1/Upstream/1449200; hsa-mir-12121/Downstream/128479;
Nearest TSS
ENST00000550708/Upstream/18319; ENST00000466378/Downstream/16230;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/60029, chr14-CpG: 66/Downstream/96603
Upstream sequence
tgatttcattcactttattttccagtttctgagataatacatttgctttctgctcctctaacagtcaccgatcagtggtggtgatagtagtggtggtggt
Downstream sequence
cttttgttattaactaattacctttaccagttctctttctttgttcatgtggatttgaaatactctctggggtcggctgttttcagcacaaaaaaacttc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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