VISDB Viral Integration Site DataBase

VIS ID

TVIS42000099

Fusion event

EBV-OCA2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

67127

Orient

+

Integrated sequence

CGCCGTCACCCTGCCGGAGAAGATTCTTGTGTTCCTGCTGATTGAAGGCATCTTCTTCATTAGCTCCTTCTACAGCATAGCCCTGCTGCGGGTCCGGGGC| |CTAATGCCTGGCATCTGCCTGGCCAATAACTACATAAGTAGGGATGAGCTGCTCCACACCCGCGCTGCCTCCCTGTTATACAATAGCATGACAGCCAAGG

Chromosome

chr15

Cytoband

q13.1

Reference genome

Start

End

28123988/27878842 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-181a-5p ; hsa-mir-6515-5p ; hsa-mir-6869-5p ; hsa-mir-5706 ; hsa-mir-526b-5p ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6783-5p

Nearest miRNA

hsa-mir-1268a/Upstream/2030017; hsa-mir-10393/Downstream/547649;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/72198, chr15-CpG: 39/Downstream/23937

Upstream sequence

AGCCCCACAACAGGCAGACTGGGCAAAAATTAACCAGGGCTCCAACAGGCGAAGGTCACTGGACTGGGCAGGGGCACGCTCCGCCTGGGGAGAGGAGATC

Downstream sequence

TTTATtcttttttaaattttattttaagtcccgggacacatgtgcaggaagtataggtttattacataggtaaatgtgtgccatggtagtttgctgcacc