Basic Information
VIS ID
TVIS42000101
Fusion event
EBV-LOC101929129 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
111582
Orient
+
Integrated sequence
TGGACTCAAACGTCTCCCTTGCGTGGCGCAGGGACTCTAAGGCACCCCGAGCAGATGTAAACTGTGTTTCAAACAGAGCGTGGTCCCTCCCAAATCTGTC| |ACGTGCGCTCACAGCCGCTCTCTTTTCTACCGAGGCTCTTAGTTGCTGGGCCACCAGATCTCGCTTAGAACTACTCATCTTCATAAGTCACCATGTCCGC
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
70284156/69991817 (Hg38)
End
70284156/69991817 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101929129
Nearest miRNA
hsa-mir-10393/Upstream/1189892; hsa-mir-11181/Downstream/87555;
Nearest TSS
ENST00000557528/Upstream/156578; ENST00000558226/Downstream/59688;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/538410, chr15-CpG: 21/Downstream/42036
Upstream sequence
tttgcaaagattgacaattctgtcattacctcttcaaatatctttttctcttaatctcttgctcctctGAAACTATAATTGTTTTTAATATTTCAAAATA
Downstream sequence
GAGCCAAGTGCCTTTGTCTGATGGAGACGTCAGGCCAGCCCACTGCTTCCTTAGATGCAGGTGCCATGGAGTCCCAGGGAGCAGAGAATGTGGAAGTGGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate