Basic Information
VIS ID
TVIS42000102
Fusion event
EBV-chr15 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
154683
Orient
+
Integrated sequence
TGACGGTGGCCCCCTGGTAGCCGTCCCGGTCAGAGGCCGAGGGCATGGGCAGGATAAAGTTTTCCTTTTGGGCGGCCGCCAGGAGGCAGGAGAACACGCG| |GATCTGCTGCCCATCGTCCAGCACCCGCCTGCAGGGGATGTGAGCGATCTTGGCAATCTCTGCCACCTCCACGTGGATCACGAAATGGTTTAGCAGATCC
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
70747316/70454977 (Hg38)
End
70747316/70454977 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/375509; hsa-mir-11181/Downstream/2132240;
Nearest TSS
ENST00000557528/Upstream/133401; ENST00000630100/Downstream/50951;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/354110, chr15-CpG: 56/Downstream/130064
Upstream sequence
acacacatgcacacacactctttctctctctctctctctctctctctctctctctcATATGGGCAATTATAGCAGCCTGTGAAATGTCTGCACCTGCAAT
Downstream sequence
agatttgccctattattttctttttttaaaataaattttttttgtgtttaaataaaatttttttGTACATTTTTGTAGAGTTTTTTTAAATAAAAATTTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate