Basic Information
VIS ID
TVIS42000105
Fusion event
EBV-LOC105370932 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
11975
Orient
+
Integrated sequence
TAAAATTAAAATTGAAATTTCTCTCAAAATAATTCCAATGAAAACTTCAAAGAATCTTATGTATGTAATTCTTTTGCCCCAAACTGGGCTTCAGATGCCT| |TCTATTGCACTCTCACAAAAACATTCTGGACACATGTGCCAGACGCCTGGGCCTCTAAGGCCCTCGGGTCCCCCTGGACCCCGGCCTCAGCAACCCTGCT
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
83963616/83294864 (Hg38)
End
83963616/83294864 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370932
Nearest miRNA
hsa-mir-10393/Upstream/227449; hsa-mir-11181/Downstream/2085732;
Nearest TSS
ENST00000557528/Upstream/10150; ENST00000492099/Downstream/152364;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/9686, chr15-CpG: 24/Downstream/84206
Upstream sequence
gtctaggacaagcaaggattctaatgaatgtctgttgaatgaaGGGCTTTTAATCTTTTTAAAATGTTCCATAGAGGATTTTAGAGAAGTCGGAGTGAAT
Downstream sequence
CAAGGAAGCTGGTCCTGTAGTGTTATTCTAGCCAGTTTGCCAACATCTCATTGTTCTCTCCTCATCTGGGGCTGTGGTCTCatcttcctgcccctcagcc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate