Basic Information
VIS ID
TVIS42000106
Fusion event
EBV-MSLNL integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148455
Orient
+
Integrated sequence
TTCCTGCGTACCGAATGGCATGAAGGCACAGCCTGTTACCATTGGCACCTTTTTTCCATGTAAACCTCCGTGATCCTGGGTCCTTTGGAGACTCAAGTGT| |GAATTTGTTTTGGTGTTCGGCGCCAGGGTATCTCGACGTTGGAATGTCAACTCAACTTGGGCACCTCGATAACCGGCTCGTGGCTCGTACAGACGATTGT
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
826563/776563 (Hg38)
End
826563/776563 (Hg38)
Orient
-
Location type
Intronic
Target gene
MSLNL
Nearest miRNA
hsa-mir-3176/Upstream/6286; hsa-mir-11401/Downstream/958422;
Nearest TSS
ENST00000527434/Upstream/10779; ENST00000570058/Downstream/2137;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/8512, chr16-CpG: 20/Downstream/6264
Upstream sequence
tcacacctgtaatcccagcactttaggagatggtgggaggatcgcttgagcccaagacttcgagaccagcctgagtaacatagggagacccatctctaca
Downstream sequence
acgccgtggctcatgcctgtaatcccagcagtttgggaggccgaggcgggcggatcacctgaggccagtctgagaccagcctgcccaatatggtgaaacc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate