VISDB Viral Integration Site DataBase

VIS ID

TVIS42000107

Fusion event

EBV-RBFOX1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

8934

Orient

+

Integrated sequence

GCTAAACGAAGGAGAATGAAGAAGCAGGCGAAGATTCAGGAGAGTTCACTGCCCGCTCCTTGATCTTCAGCCACTGCCCTTGTGACTAAAATGGTTCACT| |ACCCTCGTGGAATCCTGACCCCATGTAAATAAAACCGTGACAGCTCATGGGGTGGGAGATATCGCTGTTCCTTAGGACCCTTTTACTAACCCTAATTCGA

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

5668416/5618415 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-let-7b-5p ; hsa-mir-3157-5p ; hsa-mir-153-5p ; hsa-mir-935 ; hsa-mir-4691-3p ; hsa-mir-1305 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-498 ; hsa-mir-4753-3p ; hsa-mir-627-3p ; hsa-mir-6832-3p ; hsa-mir-562

Nearest miRNA

hsa-mir-1225/Upstream/947025; hsa-mir-11401/Downstream/14052;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/378030, chr16-CpG: 127/Downstream/400498

Upstream sequence

aggctgaggagggctgatcactggagctcaggagttcgagaccagcctggccaacatagtgagacccctgtttctaaaaagaatcacaaagttaggccgg

Downstream sequence

caagctccacccaccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccatcacgcccagctaattttttgtatt