Basic Information
VIS ID
TVIS42000108
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
127218
Orient
+
Integrated sequence
GAAGCATCGCCCACTCCAAAAACCGACACGAGTGCGCGCTTCTGGGTCACAGACATTCGGCGAACGTGACAAAGCTGGTGGTAAACGAGCGCAAGACCCG| |CCTGGACATACTGGGCCGTAACGCTAACTTTTTAACGAGGTGTAAGCATCAGGTTAATCTAAGACAGTCACCTATTTTCCTGACCCTCCTGAGGCACATC
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
27118201/27106880 (Hg38)
End
27118201/27106880 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA16E
Nearest miRNA
hsa-mir-1225/Upstream/1081570; hsa-mir-11401/Downstream/1284102;
Nearest TSS
ENST00000527434/Upstream/39022; ENST00000563881/Downstream/69707;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1413570, chr16-CpG: 34/Downstream/2810
Upstream sequence
gagatggctgcagattttttttttttgtgtgtgtgtgtgtgtgacagagtctcgctctgtcacccaggctgcagtgcagtggtgcgatctcggctcactg
Downstream sequence
aacctccgcctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgagattacaggcagccaccaccacacctggctaatttttgtatttt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate