Basic Information
VIS ID
TVIS42000109
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
6294
Orient
+
Integrated sequence
GCAAAGTGAAGGGCTCGGAAGGCAGGCGGGGCCTAGCAATGTCACAGCTAAATGCCCACCAGGGCACACACTCAAGCGGGGTCTCGGAGCTCCTAGGTCA| |GACCACGAAAGGTCAGCCTGCAAGGTGGATGGCGTGTTTTCTGAGGTTATCCCCGCTACGTGCAGTGCTGGGTGATAGAGACCCTAGAATGTGTCGAAAT
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
48519309/48485398 (Hg38)
End
48519309/48485398 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/14321725; hsa-mir-11401/Downstream/1807218;
Nearest TSS
ENST00000527434/Upstream/36996; ENST00000563994/Downstream/61186;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/99408, chr16-CpG: 28/Downstream/11226
Upstream sequence
tttaaatatcgacaactaCttctttttttttttttttttgagacggagtctcactgtgttgcccaggctggagtgcagtggcatgatcttggctcactac
Downstream sequence
agtctcccaggctggaatgcagtggtgcgatcttggctcactgcagcctccacctcctgggttcaggtgattctcctgcctcagcctcccgagtagctgg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate