Basic Information
VIS ID
TVIS42000110
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
114565
Orient
+
Integrated sequence
GGCGGTTGTGGCCGTATAGACTTTCATCTGGGGCGTAGAGGCATCGCTCAGCACCCAGAGGCACTCCTTGTTGAGGAACTTGCGAAGCTGTTCCCGGCTA| |CTGTTCGCGGCGGATGCCATGACGTGCCAGAATATATCCCCTCTCCTCGGGGGTGAGTGCCAATTGGCCTTTAATAACAAAGCCCCCAGGCAGCACCAAA
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
61647183/61613279 (Hg38)
End
61647183/61613279 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/3840927; hsa-mir-11401/Downstream/5589042;
Nearest TSS
ENST00000527434/Upstream/1090029; ENST00000562349/Downstream/100779;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1858111, chr16-CpG: 117/Downstream/421938
Upstream sequence
CCTTGGTCTGTAATGACTGTGGACAAATTGGTTGTATTCTAGGCATTGTGTTGAGttttctttttcttttttaattttttttgagatggagtttagctct
Downstream sequence
aataagcaaaagaaaaaaaaaaaaattaaaacaaaaacgaaaacaaaaGTATTATGACAAATAGTGAACTTACGaaaagcagaaagaatattatagtgaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate