Basic Information
VIS ID
TVIS42000112
Fusion event
EBV-chr16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
154558
Orient
+
Integrated sequence
GTGCTCTTCTCCCGGCGTTATCATGGTAGAATAACAGAGATTATGAGCCTGAATGATGCTCGGGTAGAGGCTGGCAAAGTCCACCACCAGAACCGGGGAG| |TTGTAGAATCCGGACAGGGGCTGGATGACGGTGGCCCCCTGGTAGCCGTCCCGGTCAGAGGCCGAGGGCATGGGCAGGATAAAGTTTTCCTTTTGGGCGG
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
77221280/77187383 (Hg38)
End
77221280/77187383 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/318364; hsa-mir-11401/Downstream/4197635;
Nearest TSS
ENST00000527434/Upstream/451041; ENST00000563279/Downstream/3452;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/552128, chr16-CpG: 80/Downstream/2888
Nearby gene
MON1B(+3536) ;
Upstream sequence
gtgctgggattataggtgtgagccaccgcgcacggcTGGGTGGGGGtttttatccttatttgacaggctagagactgggattcagagagggaggtaaccc
Downstream sequence
AGTCTTTTAGATTTTGGAAGCAACACATACCACATTTCAGTGTGTGACTTTGACTCATTTACAGAATTACCTGTAGAtttcaagtgagaagaacaaaaga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate