Basic Information
VIS ID
TVIS42000113
Fusion event
EBV-LOC105371508 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
49476
Orient
+
Integrated sequence
CCAGTTCTGCTACGAAGAGTACGTGCAGAGGACTTTTGGGGTGCCTCGGCGCCAACGCGCCATAGACAAGAGGCAGAGAGCCAGTGTGGCTGGGGCTGGT| |GCTCATGCACACCTTGGCGGGTCATCCGCCACCCCCGTCCAGCAGGCTCAGGCCGCCGCATCCGCTGGGACCGGGGCCTTGGCATCATCAGCGCCGTCCA
Host Sequence
Chromosome
chr17
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
6053559/6150239 (Hg38)
End
6053559/6150239 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371508
Nearest miRNA
hsa-mir-1253/Upstream/1180089; hsa-mir-10226/Downstream/505201;
Nearest TSS
ENST00000595228/Upstream/68357; ENST00000573385/Downstream/284840;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/29475, chr17-CpG: 54/Downstream/293906
Upstream sequence
CTGGTCCTTCTGTCTGGTGGCACTTAGAGTCTTTTGTGCCATAATGCAGCAGTATGGAGGGAGGATTTTATGGAGAAATGGGGATAGTCTTCATGACCAC
Downstream sequence
CTTTGTGGGAAGAACTGATAGACACAGCAGGTGGGATGGGCTGGGAGGGAGAGGAACTGAGGAGGAGGTGGTTTGGGAAGGCTTCTGGACCATGAATTAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate