VISDB Viral Integration Site DataBase

VIS ID

TVIS42000114

Fusion event

EBV-GAS7 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

135021

Orient

-

Integrated sequence

TTGTTTCGGGTAGGGGAGTAAGGCCGTGCCAGGCCGCCATGCTCAGGGCCACGGCGTGCCAGAGGCCCTCGTAGTCGTGCGCATCCGAGAGGATGGCACG| |GTCCAGAAGCAGATAGCCGGCCAGGCAGAGGAAGGCCACAAAGAGGGGGCGAAGGCGTGCCCGAACCCGGGTTTCATGCTCGTCTGCACCCCAGTGGACA

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

9973720/10070403 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-1255b-5p ; hsa-mir-6744-5p ; hsa-mir-1255a ; hsa-mir-1287-5p ; hsa-mir-4487 ; hsa-mir-450b-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-3124-3p ; hsa-mir-6837-3p

Nearest miRNA

hsa-mir-1253/Upstream/1883399; hsa-mir-10226/Downstream/2011496;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/165381, chr17-CpG: 142/Downstream/127314

Upstream sequence

CTGCCTGAAACTCAATCATGTATTTGTTTGGTTCACTCAAATATTGCTGCTTCTTCTTCGTttttctttctttcttttttttctttttcttgagacagag

Downstream sequence

cccaggctggagtgcagtggcacgatctcagctcactacaacctgcgcctcccaggttcaagcgattctcctgcctcagcctccagtgtagctgggacta