Basic Information
VIS ID
TVIS42000115
Fusion event
EBV-chr17 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
152039
Orient
+
Integrated sequence
GCAAATGAGTCCGGTGAAGGTGACGTTGCATATCAGGCGCGGCTTCCTTCCGAATTTTGTGCGCAAAAGTTTCCAGATGATGATAACTGTGAGGAGGACG| |ATCAGGACTGCCGCCAGTAGGTAGCAGCCGGCTTTCAGTCCTTGGACGGCCGTGTGCATGCCTTTGGTGGGGCCTTCCCTGCACATGTTGGGGCCTCTGT
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
14549782/14646465 (Hg38)
End
14549782/14646465 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/1102819; hsa-mir-10226/Downstream/605162;
Nearest TSS
ENST00000595228/Upstream/272326; ENST00000455092/Downstream/79264;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/301061, chr17-CpG: 77/Downstream/614148
Upstream sequence
CCTAACCCAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAGCAG
Downstream sequence
GTGGTTGCTCAGATTTTCTATGCATTTTCTATGATTGCGTGGGATTTTTTTTGTTGGTTTGTTTTTGtttttgtctaggtaacctatcaattgctgagaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate