VISDB Viral Integration Site DataBase

VIS ID

TVIS42000117

Fusion event

EBV-TRIM16L integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

44372

Orient

+

Integrated sequence

GGAGAGAGTGCACAGTGACAGTGGGAGAAACACGGCCTCTGAGACATGTATGGGGGTGTTCATCTCACGCAGAAAATCTTTGCCCAGCTCAAAGTTGGCA| |GAGATTCCCCTGAAGAAGTCCCGTAGTGAAAAATGGGATCTGTCTACACCATGTCTGGTGTGCCGGGAACATATTGATCGGGCCACACTGCCAACCCTTT

Chromosome

chr17

Cytoband

p11.2

Reference genome

Start

End

18602463/18699150 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-365a-3p ; hsa-mir-5589-5p ; hsa-mir-6776-5p ; hsa-mir-424-3p ; hsa-mir-548c-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-4709-5p ; hsa-mir-508-5p

Nearest miRNA

hsa-mir-1253/Upstream/358264; hsa-mir-10226/Downstream/645356;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/16634, chr17-CpG: 42/Downstream/82062

Upstream sequence

CGGTGAACTCGATGACAAGGGGCAGCTGGTTGTGTTTGATAAAGTCCAGCAGGTTCTCCTTGGTGACCTCCCCTTCAAAGTTGTTCCGGCCTTCATCAAA

Downstream sequence

CAGTTTTTGGCAAAATGCTGGCAATTCCCAGGAAGATATGTGGAGAACGGAAAGGTTGCTACACCCAAATAGTGGCGCAAAGGCTATGATTATGGAGGAT