Basic Information
VIS ID
TVIS42000118
Fusion event
EBV-NSRP1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
131575
Orient
+
Integrated sequence
GCCAAGACTCTGAAAGGGGTGGTAAATTTCATCTGGCATGCTAAAACCTCAGCCGACGTGTCTTCCCTTCCATGCCTCGCCCGAGTCACATTCTTGTGCA| |TGGCCTTAATGGCATTTTCATACACATGAGTCCAGTACCGCATCGGTTCAGGGACTACAATGGTCAGGTCCCCAAAGACAGCCTTCAAATGATTCAGCAT
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
28444501/30117483 (Hg38)
End
28444501/30117483 (Hg38)
Orient
+
Location type
Intronic
Target gene
NSRP1
miRNAs that regulate target gene
hsa-mir-324-3p ; hsa-mir-186-5p
Nearest miRNA
hsa-mir-1180/Upstream/311; hsa-mir-10226/Downstream/976867;
Nearest TSS
ENST00000595228/Upstream/311; ENST00000589608/Downstream/14;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/490, chr17-CpG: 74/Downstream/117886
Upstream sequence
gtCTCAATTAAAAAATAAATAggccgggcacagtggctcatgcccataatcccagcactttgggaggccgaggtgggcagatcacctgaggtcaggagtt
Downstream sequence
GAGTTGGATCTGATGGGATGGTTCTCTCAGATGCTCCGAGGCAAAGCACATGATCTTAATAAAGTGTAATGCGAACTTGCCCCATGGCTACTTGGGTTTC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate