VISDB Viral Integration Site DataBase

VIS ID

TVIS42000119

Fusion event

EBV-ZNF207 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

54507

Orient

+

Integrated sequence

GCGTAGGGGGCCTCCAGATCCGTGTTGACCACCGCTGATTTCATGTCCGGGGACTGCAGGGCCTGGCGCGTCTGCGCGAGGGCCGAACGGATGGCATCGG| |CCGCCGTCCTGGCGCGAAAGAGGGCCCCGGCCGCTTCCTCCGCTCCTCGCCCTCCTCCTCCTTCTTTGGCGGTAGCCGCGGGGGTGGCGGGCCAAGCGTC

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

30702837/32375818 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-361-5p ; hsa-mir-30e-5p ; hsa-mir-26a-5p ; hsa-let-7b-5p ; hsa-mir-33a-3p ; hsa-mir-299-3p ; hsa-mir-409-3p ; hsa-mir-8068 ; hsa-mir-101-3p ; hsa-mir-1343-3p ; hsa-mir-4774-5p ; hsa-mir-6783-3p ; hsa-mir-4772-3p ; hsa-mir-224-5p ; hsa-mir-4786-3p ; hsa-mir-144-3p ; hsa-mir-3910 ; hsa-mir-548an ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-2053 ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-323b-3p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-6507-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-5589-5p ; hsa-mir-1207-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-140-3p ; hsa-mir-891b ; hsa-mir-378a-5p ; hsa-mir-4683 ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-5193 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-331-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-4762-5p ; hsa-mir-34c-3p ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-1306-5p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6734-3p ; hsa-mir-1224-3p ; hsa-mir-1229-3p ; hsa-mir-627-3p ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-5003-3p ; hsa-mir-3929 ; hsa-mir-4329 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-6746-5p ; hsa-mir-6771-5p

Nearest miRNA

hsa-mir-1180/Upstream/25616; hsa-mir-10226/Downstream/4657927;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/25377, chr17-CpG: 94/Downstream/68124

Upstream sequence

CTCTGCTTTGGCAAGAGGCAGAATCCAGACACTGGCGGGAGAGCGCCTGCCTGCCGGGCGTTCCTGGCTCCTGCTGCAGGCACCACAGAGACCCCAGGCC

Downstream sequence

GTAAAAGTCCTTTAAAAGGGGATTCAATTATAAGGCTATTTGACTATAGGGCAGATTTTTATAAGTAAACATTCCCCCAATTCCACTTATGCTAACTGTC