VISDB Viral Integration Site DataBase

VIS ID

TVIS42000120

Fusion event

EBV-SYNRG integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

35451

Orient

+

Integrated sequence

CCTCTCGCCCAAGCTGCTTTGATTCCTGGGATATTTTTGGGAATGGTGTTAACTTTCTCCCCTTGTATTTGCTATTCAATCAACCTGATTCCCCCTGCTC| |ATACCTCCACTTACAACCAAGCCACTACGGCCACGTCCCCGGCCTCCCGCTCGGGTAAGTGCTTTTTCATTTTTAGCCCCAGCCCCTCCTCTATAAGTTC

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

35890034/37529932 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1180-3p ; hsa-mir-1304-3p ; hsa-mir-3191-5p ; hsa-mir-4284 ; hsa-mir-29b-1-5p ; hsa-mir-4772-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-6817-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-498 ; hsa-mir-24-3p ; hsa-mir-4783-3p ; hsa-mir-5693 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6875-3p ; hsa-mir-22-5p ; hsa-mir-1184 ; hsa-mir-5584-3p ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-148a-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-193b-3p ; hsa-mir-193a-3p

Nearest miRNA

hsa-mir-1180/Upstream/496119; hsa-mir-10226/Downstream/84999;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/17008, chr17-CpG: 69/Downstream/79105

Upstream sequence

taattcacaggttgttcacaaggatcaactgatagatgtaaagtgcttagcataatgcctgggacatggtgagtgGAGTCATTGCCACCATTTCCCCATA

Downstream sequence

TGCCACCCAAACAAAGAACCTTAAAATCTAAATGTAAAGAAGGAGGCTTTTAAGTTACTCTACAGTCCTGGTATATATATGTACAAGAGCAATGTGCAGA