Basic Information
VIS ID
TVIS42000122
Fusion event
EBV-LINC02072 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
112497
Orient
+
Integrated sequence
AAGAGCTCCAAAGCCAGGCTCGAGAAGTCATAGTCATCCTCGGCCACACGGCCGGAGCTCCGGGCCTCGTGCCAGGGCCTGTTGTCCTGGGGGAGGATAT| |TGGACACGAGCAGGAAGCTCTTGAGTGGCGTCTCCACCAGCTTAAATTGCTCGGGCGTGTCCTGGCAGGCCTCCAGTGCCAGTTCCAGACACTGCCCATA
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
49416696/51339335 (Hg38)
End
49416696/51339335 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02072
Nearest miRNA
hsa-mir-10226/Upstream/570605; hsa-mir-1250/Downstream/5551935;
Nearest TSS
ENST00000595228/Upstream/2620; ENST00000592081/Downstream/96092;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/78113, chr17-CpG: 89/Downstream/818480
Upstream sequence
AATTGAAAATCTTTCCTCTTGAGTGTGAACTCACCATCTTTATCCTTCACAGCATGGCACTGCAGATGGCAACCAATGAGTGACAAATGTTGACTGAAAG
Downstream sequence
aggaatggtttttacatttttttttcctctttttgagacggtcttgctctgtcactcaggctggagtgcagtggcacaacctctgctcactgcagccttc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate