VISDB Viral Integration Site DataBase

VIS ID

TVIS42000124

Fusion event

EBV-BCAS3 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

96879

Orient

-

Integrated sequence

TCGTGGACGTGGAGAAAAGAGGCCCAGGAGTCCCAGTAGTCAGTCATCATCATCCGGGTCTCCACCGCGCAGGCCCCCTCCAGGTAGAAGGCCATTTTTC| |CACCCTGTAGGGGAAGCCGATTATTTTGAATACCACCAAGAAGGTGGCCCAGATGGTGAGCCTGACGTGCCCCCGGGAGCGATAGAGCAGGGCCCCGCAG

Chromosome

chr17

Cytoband

q23.2

Reference genome

Start

End

59280581/61203220 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1278 ; hsa-mir-1285-3p ; hsa-mir-2861 ; hsa-mir-3187-5p ; hsa-mir-326 ; hsa-mir-330-5p ; hsa-mir-3664-5p ; hsa-mir-3667-3p ; hsa-mir-378g ; hsa-mir-4486 ; hsa-mir-4714-5p ; hsa-mir-514a-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-6734-3p ; hsa-mir-6860 ; hsa-mir-6883-3p

Nearest miRNA

hsa-mir-10226/Upstream/1160115; hsa-mir-1250/Downstream/1740995;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/525101, chr17-CpG: 720/Downstream/192479

Upstream sequence

AAGATACTGCGTCAGACTCTGCGTTCTGAGTAGAGTCTCAGACAATGAAAAAAGAAATACAATGAAAAAGGGGAAAACTTCAATCCAGAATCTCTTGCCA

Downstream sequence

gatcttggctcactgcagcctctacttcctgggttcaaatgattctcctgcctcagcctcccgagttgctgggattacaggtgcccgacaccacacctgg