Basic Information
VIS ID
TVIS42000128
Fusion event
EBV-chr17 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
129962
Orient
+
Integrated sequence
AGAAACCTCAAACATGGTAGTCAGCGTTTCCGTGTCCAGTTCCGGCTCCCGGCAGCCTCCCTTCATCTCCAGCAGGACCAGTTTCTGGAGAACGTAGCGA| |GCGTAGCTGGCGGCTGTCATGGTGACGGCTCGGGAAAACATATCCTTCAGGTTGGGTACAAAGTAGTTGTGAAAGTTGGCATAATGCACAAAGGTTGTAA
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
64816330/66820212 (Hg38)
End
64816330/66820212 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/33044; hsa-mir-1250/Downstream/651277;
Nearest TSS
ENST00000595228/Upstream/403358; ENST00000307139/Downstream/14905;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/516713, chr17-CpG: 48/Downstream/14756
Nearby gene
PRKCA(-9468) ;
Nearest cancer related gene
PRKCA(OG, -9468) ;
Upstream sequence
CGCGGCGGCGCCCAAGCAGGGAGAGGTGGCACCCGGACCGGTGTGAGGGCTTTCGGACGCGACCCCCCCAGCCCCCCACCCTCCCACCCCCACCCCCTGC
Downstream sequence
aacaatgaaataccatgtttttatctgttaacttggcagaaaatatgctttcttgaaagattaaatcccaattttggcaagaattgggaaagtctgccct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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