Basic Information
VIS ID
TVIS42000130
Fusion event
EBV-chr18 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
74710
Orient
+
Integrated sequence
CCCCAACGGCGGGCTAAACAGAACGATGGCCTTCTATCTCCCAGACTGGTCGTGCTGCGGGCTCTGGCTCTTTGGCCGGCCCAGGAATAGATACAGCCAG| |CTCCCTGAGGAGCCGGAGACCTTTGAGTGCCCGGACCGCTGGCGAGCCGAGATAGATCTGGGCCTGCCCCCTGGTGTGCAGGTGGGAGATTTGCTAAGAA
Host Sequence
Chromosome
chr18
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
10285974/10285977 (Hg38)
End
10285974/10285977 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3976/Upstream/3911552; hsa-mir-1-2/Downstream/473607;
Nearest TSS
ENST00000575820/Upstream/160637; ENST00000580258/Downstream/86403;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/153839, chr18-CpG: 19/Downstream/128380
Upstream sequence
TAGGGTAGCTGCCGCGACTGCTCTCAGCCCAAACATTATTCAATGTTCAGGATTGATTAAGGAGAGCAACCCTTGGGGGACACCCCCACTAAGGAGGCTC
Downstream sequence
GAGCTGTTGTGTAAAGTGTTCAATGATTACCATTCATCATGCAGCCACAACAACAAAACACACCACAACACCTGAGGGACAATACTGGGCTCCATGGtgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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