Basic Information
VIS ID
TVIS42000132
Fusion event
EBV-chr18 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
85553
Orient
-
Integrated sequence
TTTTGCGCCAATTGTTAACGGGGGGCGTCAAGAAAGGGAGACCATCACTTAAGTTACAGGCCGCCCTTGAGCGTCAAGCCGCTGCGGGCTGGCAGCCTTC| |ACCAGGGTCCGGCACCAGTGACAAGATTGTGCAGGCGCCTATTTTCTACCCACCCGTTTTGCAGCCCATACAGGTTATGGGGCAAGGGGGTTCCCCAACG
Host Sequence
Chromosome
chr18
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
27050681/29470716 (Hg38)
End
27050681/29470716 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/2879181; hsa-mir-122/Downstream/828194;
Nearest TSS
ENST00000575820/Upstream/108753; ENST00000584482/Downstream/47543;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1292505, chr18-CpG: 128/Downstream/1570807
Upstream sequence
ataaaggaaacgtggtacatatacaccatggaatactgtgcagccataaaaaagaatgagatcatgtcttttgcgggaacatgggtggagctggaggcca
Downstream sequence
tcaatttttttattcctttgaatactttttaatcctcatgctatttctcctatccttccagaaatctgctgatgtgactgttagatcttttgctgtattt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate