VISDB Viral Integration Site DataBase

VIS ID

TVIS42000134

Fusion event

EBV-BSG integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

133765

Orient

+

Integrated sequence

TGCCATGCAGCGGCGCGTGTTCCCTAAGCAGCTGAGGGGCAACCTGAACTTTACCAACTCCGTCTCCCTAAAGCTGATGACAGAAGTGGTGGCGGTGCTT| |GAGGGCACCACCCAGGACTTTTTCTCAGACGTCAGGCACCTGCCAGACCTCCAGGCTGCCCTGATCCTCTCGGTGGCCTACCTGCTACTCCAGGGGGGCT

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

573429/573429 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-328-3p ; hsa-mir-361-5p ; hsa-mir-92a-3p ; hsa-mir-22-3p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-22-5p ; hsa-mir-492 ; hsa-mir-1289 ; hsa-mir-1299 ; hsa-mir-152-5p ; hsa-mir-3198 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4449 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-566 ; hsa-mir-5706 ; hsa-mir-652-3p ; hsa-mir-6717-5p ; hsa-mir-6789-3p

Nearest miRNA

hsa-mir-1302-11/Upstream/501319; hsa-let-7e/Downstream/231511;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/295, chr19-CpG: 61/Downstream/4326

Upstream sequence

AGGACCCTTCCTTGATATCAGTGTGCAAAATCTCACATCAAGGGACCTCCCCTCCACAAAAAAAGAATAATAAAGAGTCCTTCTTTTCCAGGTTGAGAAA

Downstream sequence

GGCTCTGAGTGGGTCAGCCCTCCGGATCGGGAAGGGATTACCGTTCTTCACGGGATTTAGCCCTGGCGTCTTGCCTAGGGCGTGCACCTGCCCCCGGGTG