Basic Information
VIS ID
TVIS42000135
Fusion event
EBV-PEX11G integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
81894
Orient
+
Integrated sequence
ACGCCAAATCCACCCCGTTCTCCCAGTCAGATGTCCGTGCGTGACCGTCTGGCTCGTTTGCGTGCTGAGGCACAGGTCAAACAGGCTAGTGTTGAGGTGC| |AGCCCCCCCAGTTGACCCAAGTATCCCCTCAGCAACCAATGGAGGGGCCGTTGGTACCAGAGCAGCAGATGTTCCCTGGTGCCCCCTTTAGCCAGGTTGC
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
7550308/7485422 (Hg38)
End
7550308/7485422 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
PEX11G
Nearest miRNA
hsa-mir-1227/Upstream/748644; hsa-let-7e/Downstream/132017;
Nearest TSS
ENST00000633603/Upstream/2110; ENST00000597207/Downstream/3550;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/7953, chr19-CpG: 41/Downstream/3391
Upstream sequence
caggctggtctcgaactcctgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccggccGATTTGGACTTTTTAACA
Downstream sequence
tcggctcactgcaagctccacctcccgggttcaggccattctcctgcctcagcctcctgagtagctgggactgcaggcgcctgcaaccacacctggctaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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