Basic Information
VIS ID
TVIS42000136
Fusion event
EBV-C19orf38 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
68591
Orient
+
Integrated sequence
ATTTAACCACGCCTCCGAAGAGGCGGCCGCCAGTACGGCCTCTGAGCCAGAAGATAAAAGTCCCCGGGTGCAACCACTGGGCACAGGACTCCAACAACGC| |CCCAGACATACGGTCAGTCCATCTCCTTCACCTCCGCCACCTCCTAGGACCCCTACTTGGGAGAGTCCGGCAAGGCCAGAGACACCCTCGCCTGCCATTC
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10978783/10868107 (Hg38)
End
10978783/10868107 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
C19orf38
Nearest miRNA
hsa-mir-1181/Upstream/39072; hsa-let-7e/Downstream/245367;
Nearest TSS
ENST00000633603/Upstream/19612; ENST00000588947/Downstream/3406;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/31367, chr19-CpG: 154/Downstream/2703
Upstream sequence
GGATAAAGGAAAGGACTTCGCTTTCTCTCCCCACTCACACCCTGTGCCAACAGAGGCCCAAAGTGAGACACACGCTTGCTCAGTAGCTCTCTCATGAAGG
Downstream sequence
gtctctgctttcacttctAGTTTCCTTTTGAAGCCTTATACTGCTTTGTCGTTGGCTGAAATGGTAAGGCAGCAGCTGACCTGTCTCTAGCTTTCCCCAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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