Basic Information
VIS ID
TVIS42000139
Fusion event
EBV-chr19 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
71225
Orient
+
Integrated sequence
CAATCTCTGGATGGGCGGCCACCGCCAGCATCGACTGTAGGAACGGGTCTTGGATGGGCTCTAGGGTCAGAGAGGCCAGGGGGCTGGGCAAGGTGACAAA| |TGTAATCTTGGAGACAGGCTTAACCAGACTCATGTCAAACCACGGTTTGTTCGGCAGGGGCCTCTGGCTGCGTTCTTGCCTCGCCTGCTTCCTTGTGCTC
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
32985338/32494432 (Hg38)
End
32985338/32494432 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/12095078; hsa-let-7e/Downstream/2628268;
Nearest TSS
ENST00000633603/Upstream/16949; ENST00000379316/Downstream/86636;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/88105, chr19-CpG: 99/Downstream/86537
Nearby gene
DPY19L3(-8539) ;
Upstream sequence
accatgccaggctaatttttgtattatcagtagagacagggtttttttttttagacggagtctcgctctgtcgtccaggctggagtgcagtggcgcgatc
Downstream sequence
atactgtatttttctattgctgccatatcaagtgaccaaaaacatgcagcttaaaacatcacaaacgtggtctccagttttgtaatcagaagtccaggta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate