Basic Information
VIS ID
TVIS42000141
Fusion event
EBV-ZNF773 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
56691
Orient
+
Integrated sequence
TCGGCCAGCTGGGGAATTTCAGCCAGCATCTTAGCACCGGCATCTACACGGACCGCGTCCTTCGTGGCCAGGGACGGCAGGCAGGCCTCCAGCTTTGCGG| |CCAGGTGCTTATGGAACTCTCCCGCTCTTCCCTTGTTTTCTGATAGCATGTTTGCGAGGTTTTGGATGTTAAGTTCGGAAGTGAGCAGTTGCTCCAGGTC
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
58013104/57501736 (Hg38)
End
58013104/57501736 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF773
Nearest miRNA
hsa-let-7e/Upstream/2113494; hsa-mir-10394/Downstream/832952;
Nearest TSS
ENST00000633603/Upstream/1779; ENST00000601958/Downstream/3153;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1361, chr19-CpG: 64/Downstream/25468
Upstream sequence
TTGCCACTGCCTGGCTCCACCGGCCTTTTTCTCCCTGCAAACAGAGTCCGCCCCCCTGCCCACCTCTCTCGACATCTCTCTACCCAGCTCAGCCCCTGCA
Downstream sequence
TCTTGTGACTTCAGAGTTAGTTATAGACCATGAGAAGGTAAGTGGAGGATGTCTCAGGCCCTCACCCTCCTCAACTCCTACCTACATGGTCTTCAGAATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate