Basic Information
VIS ID
TVIS42000143
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
35854
Orient
+
Integrated sequence
TTTCCCAGCCTCCGCTTGTTAGGTCCTAGTTATGGGTTTTCCATGGGGGACTTAGTATCCGTTCTATTAGATTAACGTGCAAGACGCTAAACTTAACCAA| |GGTCAGCCAAGGGACGCGTGTTATCCCAGGCTGCCCACCCTGAGGATTTCCCCCCAAAATCCTCCTACCCTCTCTTTATGCCATGTGTGTTGTTGGCTTG
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
8666207/8526077 (Hg38)
End
8666207/8526077 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-7158/Upstream/1875638; hsa-mir-10b/Downstream/1666537;
Nearest TSS
ENST00000437798/Upstream/142456; ENST00000331129/Downstream/49424;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/68634, chr2-CpG: 21/Downstream/119252
Upstream sequence
ccccagctccccagcctgtgataatgaccactccactcgttacttctactgagtttgactattttagattccacatataagtaagatgatgcagtatttg
Downstream sequence
TCGATTTTACCACGGAGGAGGTCAGCGATCAGCTTCAGGCCTGGCTAGTTTTCACAGTTTCCCTTGCTGGACTCACTTCCATGTTTTCAACCTGCTCTAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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