Basic Information
VIS ID
TVIS42000144
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
3425
Orient
+
Integrated sequence
GCATGCGATATGGCAGGCTGCCAGCACTATGTGCTGGGCTCCACGGTTCCCCTCGGTGGACTCAACTTTGTCAACGACCTGGCGTCCCCGGTTTCCACCG| |CCGAGATGATGGATGATTTCTCTCCCTTCTTCACCGTGGAGTTTCCCCCGATTCAAGAGGAGGGCGCAAGTTCTCCGGTACCCTTAGATGTGGACGAGAG
Host Sequence
Chromosome
chr2
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
17452925/17271658 (Hg38)
End
17452925/17271658 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2C
Nearest miRNA
hsa-mir-3125/Upstream/4534214; hsa-mir-10b/Downstream/2076771;
Nearest TSS
ENST00000437798/Upstream/301624; ENST00000483921/Downstream/246781;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/763104, chr2-CpG: 29/Downstream/267230
Upstream sequence
cagtattctatttttttttttttttgcatcagtattcatcagggatattggcctgaaatttccttttttgttgtgtcttttcccagtttcggtctcaggt
Downstream sequence
CAATACTTCCAGATGTTATTTCAAATATGGGAATGTTTGAATAGCCAATTAGTTCAGAGAAGACTGTGCAGGCTTAGAGGAAACCCAGACTCCTTAGAGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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