Basic Information
VIS ID
TVIS42000145
Fusion event
EBV-LINC00486 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
168360
Orient
-
Integrated sequence
AGGGAGTCATCGTGGTGGTGTTCATCACTGTGTCGTTGTCCATGGTAATACATCCAGATTAAAATCGCCAGAAACAGGAGGAGCCAAAGGAGATCAACCA| |ATAGAGTCCACCAGTTTTGTTGTAGATAGAGAGCAATAATGAGCAGGATGAGGTCTAGGAAGAAGGCTAGGAAGAAGGCCAAAAGCTGCCAGATGGTGGC
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33091997/32866930 (Hg38)
End
33091997/32866930 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC00486
Nearest miRNA
hsa-mir-1301/Upstream/231599; hsa-mir-10b/Downstream/551586;
Nearest TSS
ENST00000437798/Upstream/25916; ENST00000435075/Downstream/15871;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/238727, chr2-CpG: 164/Downstream/79451
Upstream sequence
agggatattggcctgaaatttccttttttgttgtgtcttttcccagtttcggtctcaggttgacagcgaatcaacccaaatgcccatcagtgatagaaat
Downstream sequence
tttttttttcttttttttttttctttttttttttttttttttttctcttctttttttttttttttttttttttctttttttttttcttctttctttttct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate