VISDB Viral Integration Site DataBase

VIS ID

TVIS42000147

Fusion event

EBV-GALM integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

66221

Orient

+

Integrated sequence

CTTTGATTACAACCAGGAGGACCTGATTCAGATGTCCCGGGACAGGGCCCCCTTTGTGGACCAGAGCCAATCTCACAGCCTGTTTTTGCGTGAGGAAGAT| |GCCGCGCGGGCCAGCACGCTAGCCAACCTACTGGTGCGCAGCTACGAGCTGGGCCTGAAGACTATCATGTACTATTGTCGCATTGAGAAGGCCGCCGATC

Chromosome

chr2

Cytoband

p22.1

Reference genome

Start

End

38919197/38692055 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-455-3p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-1-5p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-5003-3p ; hsa-mir-4803 ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-3977 ; hsa-mir-3157-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-1306-5p ; hsa-mir-129-5p ; hsa-mir-4444 ; hsa-mir-8055

Nearest miRNA

hsa-mir-1301/Upstream/3220569; hsa-mir-10b/Downstream/8685620;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/88393, chr2-CpG: 116/Downstream/58338

Upstream sequence

ctcagcaaactgaaaatagaagggaatttcttcagcccaataatggatttctatgaaaaaatctgtagctaacatcctaataaagattaggaacaagaat

Downstream sequence

GACATTTTACTGCTATTTCCACAACTCTTCAAATCCTTTAGAGCTCTATCATTGAAGTAAATAAGTTGCTGCAACTTCAGAGCTCATGAAAAATTTGTAA