Basic Information
VIS ID
TVIS42000150
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93777
Orient
+
Integrated sequence
GCAGGCCTCTCCTCACCCTCTGGGAGAGCGTGGCCGCAAATCAGGAGGTCACGGATGCCATTACCCTGCCTGACTGCGCTGAATACATAGACCTACTAAA| |GCACACAAAACATGTCTTAGAAAACTGTTCTGCCATGCAATACAAATAAATTTCTCTTACCTGCGTCTGTTTGTGTAGTGAGGTGTTGTGTCCTGTATGG
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
60297215/60070080 (Hg38)
End
60297215/60070080 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/4069285; hsa-mir-10b/Downstream/317282;
Nearest TSS
ENST00000437798/Upstream/336684; ENST00000444873/Downstream/30120;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1641103, chr2-CpG: 103/Downstream/390607
Upstream sequence
ggacccatgcattaaatatattggagaattcacaccatacaatgataattagtttcgaatatagtatggtgccccattctttacattattatcaccagac
Downstream sequence
GGAACTAGGCAGGGAGACATCAGCAGGCAGAATGGGAGCCGCACATTTCTGATTCCTCCCCTGCCCCGTAAAATCTATTTGTTTTTTAAAATTGCAATTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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