Basic Information
VIS ID
TVIS42000151
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
64515
Orient
+
Integrated sequence
TACTATGACACCTATCTGTATGTGGGGCGCAGCGGGAAGCAGGAGAGTGTGCAGCACTTTTACATGCGGTTAGCCGGCTTCTGTGCCTCAACCACCTGCC| |TCTACGCGGGTCTCAGGGCAGCCCTGCAGCGGGCCAGGCCGGAGATTGAGAGTGACATGGAGGTGTTTGATTACTACTTTGAGCACCTAACCTCCCAGAC
Host Sequence
Chromosome
chr2
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
72014528/71787398 (Hg38)
End
72014528/71787398 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2E
Nearest miRNA
hsa-mir-1285-2/Upstream/1534393; hsa-mir-10b/Downstream/3303414;
Nearest TSS
ENST00000437798/Upstream/176619; ENST00000498749/Downstream/355686;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1450, chr2-CpG: 23/Downstream/64834
Upstream sequence
GATTTTCAGCTGCATACTAATGTTGCAAGTAAAGATTTAATGCATTTAGTGTGTATTTATTGTTTTCAATTAAAAACAAATTGATTCTTCAATCATTTAT
Downstream sequence
GCCCCCCTCCCCATTCCACCCCATCCCATCCCACAGCCTGAGGCTGGTGGGCAAATCCCAGCCAGGGCTGACAGGGGTAAGGGATCCTGGCAGGCTGAGC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate