Basic Information
VIS ID
TVIS42000152
Fusion event
EBV-ANKRD20A8P integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
122386
Orient
+
Integrated sequence
GTGCATGGTGGCAGCCACTCGCGGGTCCCCGTAAAACATATGGAAAGGAATGGCGTGAAAGAGACACTGGGTGACGGCCCGGGTCCTCTCGGAGAAGGCA| |AAGGCCACCAGCCCGTTCACCAAAACAGTCTGCTCTGTCCGCTTGTCGGCGGGATTCGGGGCCAGCTGCTGCGTAACGTCATTGTCCACCGACACACGCA
Host Sequence
Chromosome
chr2
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
95511755/94846010 (Hg38)
End
95511755/94846010 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
ANKRD20A8P
Nearest miRNA
hsa-mir-1285-2/Upstream/6033556; hsa-mir-10b/Downstream/1952268;
Nearest TSS
ENST00000437798/Upstream/28209; ENST00000468063/Downstream/11239;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/110119, chr2-CpG: 117/Downstream/10843
Upstream sequence
CTGATTTGTAAAAATGAGACTATCCAATAAAGTAGAAAAATATGCATTTGCTCCTTCACACTTGTATTCAAATAAAAATTTGTAGCTAAAAAAAAAAAAT
Downstream sequence
TAATTTTGGTTATTACTTGTATTCATTGTGGCTTGTAATTCAGGGCATTTTACCTAATTCATAACTTATTACtaaatttatatatatatataaatttaGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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