Basic Information
VIS ID
TVIS42000154
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
88413
Orient
-
Integrated sequence
CCCCGGTATGAGGATCCTGACGCTCCTCTGGATTTAAGTTTACATCCAGACGTTGCTGCTCAACCAGCTCCCCAGGCTCCATACCAGGGATACCAGGAGC| |CGCCGGCCCCCCAGGCTCCATACCAGGGATACCAGGAGCCGCCGCCCCCCCAGGCTCCATACCAGGGATACCAGGAGCCGCCGGCCCACGGGCTCCAATC
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
103544321/102927863 (Hg38)
End
103544321/102927863 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/495497; hsa-mir-10b/Downstream/6213627;
Nearest TSS
ENST00000437798/Upstream/32141; ENST00000435291/Downstream/56566;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/190908, chr2-CpG: 44/Downstream/1731267
Nearby gene
LOC110121029(-4453) ;
Upstream sequence
CCAGGGGAGGAAACCGCTGGCAGGGGAAGTGAAGAGTACCATGAGTCACCCTCCGACAGCCGCCCTTTGAAGCCAGCTCCCTGGGCCACCTCCCCAGATG
Downstream sequence
gaaaacacatggagggctttaaaaacactgtgcttgcatagacagaaagatggacacagtaaacgttgggcactccaaaagggaggaggaagggaggggc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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