Basic Information
VIS ID
TVIS42000155
Fusion event
EBV-MIR4435-2HG integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
36465
Orient
+
Integrated sequence
TTTGTTGGGGAAAACACGGGGGTGCCCCCACCACTCCCACCACCCCCCCCACCACCACCCCCACCACCCCCACCACCCCCACCACCCCCACCACCCCCAC| |CACCTCCACCACCTTCACCACCACCCCCGCCCCCACCACCCCCACCACCTCAGCGCAGGGATGCCTGGACACAAGAGCCATCACCTCTTGATAGGGATCC
Host Sequence
Chromosome
chr2
Cytoband
q13
Reference genome
GRCh37/hg19
Start
112009143/111251566 (Hg38)
End
112009143/111251566 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2B
Target gene
MIR4435-2HG
Nearest miRNA
hsa-mir-1285-2/Upstream/966623; hsa-mir-10b/Downstream/69447;
Nearest TSS
ENST00000437798/Upstream/12519; ENST00000438897/Downstream/13717;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/26808, chr2-CpG: 63/Downstream/632194
Upstream sequence
attagggtcaccagtgtcctttaagaagaagaaattagggcacagattggcacatagggaagcacatgtgaagacgcagggcggcaattgcatcctcaag
Downstream sequence
accaccaccatcaccattaccaccaccaccatcaattattgagttaacatcttgtgtcaggcaaagtactcagcatttacaaatggtattacaatgatct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate