VISDB Viral Integration Site DataBase

VIS ID

TVIS42000156

Fusion event

EBV-STEAP3 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

9632

Orient

+

Integrated sequence

TACCCAGGAACCCGAAACAGTGTTTCCCAGAAGCTGTAAAAATAGAACGCCCTGGAACTGCCCCACTGTGCAATGCAGCTTTTAGCCATGCCATGCTCTA| |TAAATCACTTCCCTATCTCAGGTAGGCCTGCACACCTTAGGTATGGAGCGAAGGTTAGTGGTCACTCTGCAGTGCCTGGTGCTGCTTTACCTGGCACCTG

Chromosome

chr2

Cytoband

q14.2

Reference genome

Start

End

120002535/119244959 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-16-5p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-92a-1-5p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-4283 ; hsa-mir-4437 ; hsa-mir-24-3p ; hsa-mir-296-3p ; hsa-mir-8057 ; hsa-mir-3978 ; hsa-mir-1299 ; hsa-mir-760 ; hsa-mir-6822-3p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-7854-3p ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-518c-5p ; hsa-mir-5197-5p ; hsa-mir-6891-5p ; hsa-mir-3173-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/5523591; hsa-mir-10b/Downstream/8178578;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/20717, chr2-CpG: 25/Downstream/2979

Upstream sequence

CCAGGGCTGCTATCTCCCAGCCTTCTTTGTGCTTCTCAGCTCACACCTGCAGGGACTTTCCTACGAAGCCAAGGCACAAAGGGGAAGTGGATAGTCCGTA

Downstream sequence

AGGTCCTGCCCTCAAGCTGTTCACCATGCTTCAGGGAGAGCATAAGAAGAACTGCTCCAAGATGCAAAATGTAGACAAGCATAGGGACATGCTCACCCTT