Basic Information
VIS ID
TVIS42000157
Fusion event
EBV-LOC105373592 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
69183
Orient
+
Integrated sequence
CTTGATCTTCTTCTCCCTCAGAGTCTACTCGACCAGCACGTGGGTTTCTGCCCCCTGTCTCTTTCTGGCCAACCTGCCTCTCTTATGCCTGTGGCCCCGG| |CTGGCCATCGAGATTGTTTACATCTGCCCGGCTATACACCAAAGGTTCTTTGAACTTGGGTTGCTCTTGGCCTGCACCATCTTTGCCCTGTCCGTGGTCT
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
123148757/122391181 (Hg38)
End
123148757/122391181 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373592
Nearest miRNA
hsa-mir-1285-2/Upstream/8669813; hsa-mir-10b/Downstream/5032356;
Nearest TSS
ENST00000437798/Upstream/600689; ENST00000435441/Downstream/674140;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/635231, chr2-CpG: 79/Downstream/1633494
Upstream sequence
TGCAGAGCTGGGAAGAAATATTTCCGGCATTTCTAAGAAAAAGGGGATGGTCAAAATAGGAATGTAGGACAGCCAACAGCCAAATGAGTGGCAAAATTCC
Downstream sequence
TTTTTCTTTTCTAACCATTTTTCCCCTATTTTTGCATGGCTATGAATACACTGCAAAGGTAATTTTGTATCATTTGGAAAGATTTAAATTATTTTAGGAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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