VISDB Viral Integration Site DataBase

VIS ID

TVIS42000158

Fusion event

EBV-CNTNAP5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

166155

Orient

+

Integrated sequence

TTTCTCAGAGAGCATTTCAGGCCGGTTTTGCAGTCGCTGCTGCAGCTATGGGGTCCCTAGAAATGGTGCCAATGGGCGCGGGTCCCCCTAGCCCCGGCGG| |GGATCCGGATGGGTACGATGGCGGAAACAACTCCCAATATCCATCTGCTTCTGGCTCTTCTGGGAACACCCCCACCCCACCGAACGATGAGGAACGTGAA

Chromosome

chr2

Cytoband

q14.3

Reference genome

Start

End

125452032/124694455 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-574-5p ; hsa-mir-210-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-4789-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-466 ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-16-1-3p ; hsa-mir-1285-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-3680-5p ; hsa-mir-4798-3p ; hsa-mir-5580-3p ; hsa-mir-4643 ; hsa-mir-4789-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/10973087; hsa-mir-10b/Downstream/2729082;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/668777, chr2-CpG: 51/Downstream/1961665

Upstream sequence

ttttttttttttttctttttttttttttcttctttttttttttttttttttttcttttctttttttttttttttttttttcttttttttttttttttttt

Downstream sequence

ACATAGTCTGAAATGATCTTCATAGCTGTGTGGTTTGGCAGAATATTGGTAAAGACCTTAATGATATAAAAAATAAAAATCACTGATTATAATACATGTA