VISDB Viral Integration Site DataBase

VIS ID

TVIS42000159

Fusion event

EBV-BAZ2B integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

53941

Orient

+

Integrated sequence

TGGCGGCTGCCAGGGATTTCCGGTAGGGCCATGAGCCGTTCCCGGCCGCTGCCCGGGCCAGGGCGGCCTCGAGGGGAGCCTGGACAGGGGCTTTGGGCGG| |GGAGGGAAGCAGGCTCCGGAGTTCATCGTCGGGGGCTTCGTCGCGTGACCTGGAGAGGACGGCCTCCAGAGCCGTGTGAAAGCCCCGCCGAGTGCTTGCC

Chromosome

chr2

Cytoband

q24.2

Reference genome

Start

End

160394929/159538418 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-424-5p ; hsa-mir-487a-3p ; hsa-mir-377-5p ; hsa-mir-485-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-4327 ; hsa-mir-500a-3p ; hsa-mir-6499-3p ; hsa-mir-767-5p ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-25-3p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-599 ; hsa-mir-4276 ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-302f ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-6771-5p ; hsa-mir-425-3p ; hsa-mir-7977 ; hsa-mir-3178 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-6499-5p ; hsa-mir-6746-5p ; hsa-mir-383-3p

Nearest miRNA

hsa-mir-128-1/Upstream/351517; hsa-mir-10b/Downstream/869392;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/251362, chr2-CpG: 60/Downstream/77159

Upstream sequence

catggaggacagccaTTGCCACCCTGTCGAATTGTTCTCATAAACAGAATATTGGGTTAGGCAGAGATCCTACTGGATCAAGCCAGTGCTCTTTAGTCTT

Downstream sequence

ATTTTAGGAATCTGACTAGATTTAACTTTCTAAGAGCCTTCCTCCTGCTTCTTGGCAAACACACTTAAAAATCACATCATTTTCTCTATGGTCATGTTGC