VISDB Viral Integration Site DataBase

VIS ID

TVIS42000160

Fusion event

EBV-SCN7A integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

96369

Orient

+

Integrated sequence

AGCAGGAGGGGCAGGAGGGGCAGGAGGGGCAGGAGCAGGAGGGGCAGGAGCAGGAGGAGGGGCAGGAGGGGCAGGAGGGGCAGGAGCAGGAGGGGCAGGA| |GCAGGAGGGGCAGGAGCAGGAGGGGCAGGAGCAGGAGGGGCAGGAGGGGCAGGAGCAGGAGGGGCAGGAGGGGCAGGAGCAGGAGGGGCAGGAGGGGCAG

Chromosome

chr2

Cytoband

q24.3

Reference genome

Start

End

167262262/166405752 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7641 ; hsa-mir-8075 ; hsa-mir-210-5p ; hsa-mir-4695-3p ; hsa-mir-93-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-3675-3p ; hsa-mir-6769a-3p

Nearest miRNA

hsa-mir-128-1/Upstream/5997870; hsa-mir-10b/Downstream/2177191;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/29551, chr2-CpG: 157/Downstream/886771

Upstream sequence

AGTGAAAATGTTATCACTAACTCATAATTCAGAACTAGTAATTGATCTGTAAGGCCACTTCTCTCTCTTGCATTCTCCAATTCTACGAGGCTCCTAGCAT

Downstream sequence

CCTCTTGTTTTCGTTTCAAAGTAGTCGTAATTGGCTCACATGTGATCTTAAAAGGGTTGGCTAACAAAAACCCTGATTCTATTTCTGAAACAACTTTCTC