VISDB Viral Integration Site DataBase

VIS ID

TVIS42000162

Fusion event

EBV-CPS1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

140204

Orient

+

Integrated sequence

CCAAGCATTTCACACCTGCAAATGCACCATGTAACCACAGATCTAAACTGAAAGTTGCAGCTTTAGATGGCAAGGAAACTTGGGTTTCAGGCATAGAAAG| |CCTGGCTCACTATAGCAGCCCATGTTTGTTCCAGGGTGGGGGAAAGGCACGTGCCCTTAGAAAACTTAGCTGCAAAAATTCTATTGTGTTGGGAGAGCCT

Chromosome

chr2

Cytoband

q34

Reference genome

Start

End

211485333/210620609 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-3121-3p ; hsa-mir-4255 ; hsa-mir-4709-3p ; hsa-mir-7154-5p ; hsa-mir-101-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-8060 ; hsa-mir-16-1-3p ; hsa-mir-144-3p ; hsa-mir-216a-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-6516-5p ; hsa-mir-6738-3p ; hsa-mir-1303 ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-1200 ; hsa-mir-142-3p ; hsa-mir-630 ; hsa-mir-146b-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-496 ; hsa-mir-302a-5p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-4682 ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-4778-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10b/Upstream/2865728; hsa-mir-1244-1/Downstream/1805654;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/143797, chr2-CpG: 86/Downstream/1916847

Upstream sequence

ttagggttcttcatgagtttctgattggatattgcaaagagggaagctataaaagcctcggcaaagaaaaaacactggatcacagcaagctgagcaattc

Downstream sequence

aggcaaaaggaaagcagccgtgtcctatggaaaaagcaggagccagccagagagagggagtcggtgggggaggtgccacatactttcagacaaccagatt