VISDB Viral Integration Site DataBase

VIS ID

TVIS42000163

Fusion event

EBV-SPAG16 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

165460

Orient

-

Integrated sequence

ATGAAACTGGGCGAGACCGAGGTCACCAAGCAGGAACACCTGAGCGTGGTGAAGCCTCTAACGCTGTCTGTCCACTCCGAAAGGTCTCAGTTCCCAGACT| |TCTCTGTCCTTACTGTGACATGCACCGTGAATGCATTTCCCCATCCCCACGTCCAGTGGCTCATGCCCGAGGGCGTGGAGCCCGCACCAACTGCGGCAAA

Chromosome

chr2

Cytoband

q34

Reference genome

Start

End

214981269/214116545 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4713-5p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-6507-3p ; hsa-mir-6828-5p ; hsa-mir-651-3p ; hsa-mir-3662

Nearest miRNA

hsa-mir-10b/Upstream/358386; hsa-mir-1244-1/Downstream/3783968;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/831843, chr2-CpG: 110/Downstream/692726

Upstream sequence

GCAGAAGAAGAGGGCCTTCTCTTTCAAGGTGAAAGCAATGATTTCTGAGGCATGGCACATGTGTCTTCTCTGGGCAACAAGACTTGGAAGAGCCACTCAA

Downstream sequence

GAGGGCCCAGACCACTTGTGCAGGACCTGCCGGGAAGCACACCTGTATGGACACAGTTCCACTGCGCAGAGACCTGCTGGGAAGCACACCTGTGTGGGCC