Basic Information
VIS ID
TVIS42000165
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
36405
Orient
-
Integrated sequence
ATTCCCTCGAATCCCTACCAGGAACAACTGTCAGACACTCCATTAATTCCACTAACAATCTTTGTTGGGGAAAACACGGGGGTGCCCCCACCACTCCCAC| |CACCCCCCCCACCACCACCCCCACCACCCCCACCACCCCCACCACCCCCACCACCCCCACCACCTCCACCACCTTCACCACCACCCCCGCCCCCACCACC
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
217369269/216504546 (Hg38)
End
217369269/216504546 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/2746387; hsa-mir-1244-1/Downstream/1395967;
Nearest TSS
ENST00000437798/Upstream/5406; ENST00000624436/Downstream/24479;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/5443, chr2-CpG: 101/Downstream/128504
Nearby gene
LOC100507554(-3079) ;
Upstream sequence
TGCTGAAACCATTTTGGAATCCCAAATAATGCTCGGTGTGTGTTTTTCTGTAAGTTCTAATATTCAAATGTTGCAGTTTTCAGAAAATGTTATTAAGTGC
Downstream sequence
GGTGGTATGGTTGACACAAAGACCCACAGGTATTTTTATGGGTTCACTTAATGAAGCAGGGGCTTAGTTGAGGGTAGAGACTGTTCATTAAACCAGCCTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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