Basic Information
VIS ID
TVIS42000168
Fusion event
EBV-RBM44 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
96718
Orient
-
Integrated sequence
GGAGGGGCAGGAGCAGGAGGTGGAGGCCGGGGTCGAGGAGGCAGTGGAGGCCGGGGTCGAGGAGGTAGTGGAGGCCGGGGTCGAGGAGGTAGTGGAGGCC| |GCCGGGGTAGAGGACGTGAAAGAGCCAGGGGGGGAAGTCGTGAAAGAGCCAGGGGGAGAGGTCGTGGACGTGGAGAAAAGAGGCCCAGGAGTCCCAGTAG
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
238731834/237823191 (Hg38)
End
238731834/237823191 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
RBM44
Nearest miRNA
hsa-mir-10b/Upstream/312203; hsa-mir-149/Downstream/1245626;
Nearest TSS
ENST00000437798/Upstream/9527; ENST00000491996/Downstream/10802;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/23907, chr2-CpG: 85/Downstream/36239
Upstream sequence
ctgcgatcatcgtcacctcatcaccaccatcaccatcaccgccaccaccaccatcaccaccaccactgccaccatcaccacctccaccatcaccatcacc
Downstream sequence
TAGTAGTGTTagcacagtcattatacacagactggattcaaagtgtaattcttgttaactgtgtaacatgaagcaacaagttacttagattctgttctct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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